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Research Interests

  • Mutliple particle tracking, cellular biology,
  • Multiple Hypothesis Tracking (MHT), Enhanced-MHT (E-MHT),
  • blind source separation,
  • wavelet design, steerability,
  • 3D image processing, microscopy image processing.

Curriculum Vitae

Nicolas Chenouard received the Eng. degree in Bioinformatics from INSA Lyon and the M.Sc. degree in Artificial Intelligence and Decision from the university Paris VI, both in France, in 2006. He then pursuied Ph.D. degree from Oct. 2006 to Jan. 2010 in Image and Signal Processing at TELECOM ParisTech, Paris, France, under the direction of Prof. Isabelle Bloch and Dr. Jean-Christophe Olivo-Marin. His research has focused on statistical approaches to particle tracking in microscopy images and their application to biological mechanisms understanding. He defended his Ph.D. thesis, entitled 'Advances in probabilistic particle tracking', the 21th of January, 2010, at Institut Pasteur, Paris. Since February 2010 N. Chenouard is occupying a Post. Doc. position in the Biomedical Imaging Group, EPFL, with Prof. Michaël Unser. His current work interests are steerable wavelet design, wavelet learning, 3D image processing, and high performance computing.

Publications

Full paper list

Journal Papers

2009

N. Chenouard, A. Dufour and J.-C. Olivo-Marin. "Tracking algorithms chase down pathogens", Biotechnology Journal, vol. 4, pp. 838--845, 2009. (bib) (pdf) Δ

K. Gousset, E. Schiff, C. Langevin, Z. Marijanovic, A. Caputo, D. T. Browman, N. Chenouard, F. de Chaumont, A. Martino, J. Enninga and J.-C. Olivo-Marin and D. M\"annel and C. Zurzolo. "Prions hijack tunneling nanotubes for intercellular spread", Nature cell biology, vol. 11, pp. 328-336, 2009. (bib) (pdf)?

E. Nicolas, N. Chenouard, J.-C. Olivo-Marin and A. Guichet. "A Dual Role for Actin and Microtubule Cytoskeleton in the Transport of Golgi Units from the Nurse Cells to the Oocyte Across Ring Canals", Molecular Biology of the Cell, vol. 20, pp. 556-568, 2009. (bib) (pdf)?

M.M. Mhlanga AND D.P. Bratu AND A. Genovesio AND A. Rybarska AND N. Chenouard AND U. Nehrbass AND J.C. Olivo-Marin. "In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte", PLoS ONE, vol. 4, pp. e6241, 2009. (bib) (pdf)?

Conferences

2010

N. Chenouard, J. Buisson, I. Bloch, P. Bastin and J.-C. Olivo-Marin. "Curvelet analysis of Kymograph for tracking bi-directional particles in fluorecence microscopy images", 17th IEEE International Conference on Image Processing, 2010. ICIP 2010, 2010. (bib) (pdf) Δ

F. de Chaumont, S. Dallongeville, N. Chenouard and J.-C. Olivo-Marin. "Tracking multiple articulated objects using physics engine: improvement using multi scale decomposition and quadtrees", 17th IEEE International Conference on Image Processing, 2010. ICIP 2010, 2010. (bib) (pdf)?

2009

N. Chenouard, I. Bloch and J.-C. Olivo-Marin. "Multiple Hypothesis Tracking in microscopy images", IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09, 2009pp. 1346-1349, . (bib) (pdf) Δ

N. Chenouard, I. Bloch and J.-C. Olivo-Marin. "Particle tracking in fluorescent microscopy images improved by morphological source separation", 16th IEEE International Conference on Image Processing, 2009. ICIP 2009, 2009. (bib) (pdf) Δ

N. Chenouard, I. Bloch and J.-C. Olivo-Marin. "Multiple Hypothesis Tracking in cluttered condition", 16th IEEE International Conference on Image Processing, 2009. ICIP 2009, 2009. (bib) (pdf) Δ

2008

N. Chenouard, I. Bloch and J.-C. Olivo-Marin. "Feature-aided particle tracking", 15th IEEE International Conference on Image Processing, 2008. ICIP 2008, 2008. (bib) (pdf)

N. Chenouard, F. de Chaumont, I. Bloch and J.C. Olivo-Marin. "Improving 3D tracking in microscopy by joint estimation of kinetic and image models", Proceedings of the international conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI, , MIAAB workshop, 2008. (bib) (pdf)

N. Chenouard, S. Vernhettes, I. Bloch and J.-C. Olivo-Marin. "Morphological source separation for particle tracking in complex biological environments", 19th International Conference on Pattern Recognition, 2008. ICPR 2008., 2008. (bib) (pdf)

B. Zhang, N. Chenouard, J.-C. Olivo-Marin and V. Meas-Yedid. "Statistical colocalization in biological imaging with false discovery control", Proc. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro ISBI 2008, 2008pp. 1327--1330, . (bib) (pdf)?

C. Tauber, P.F.G Rodriguez, V. Loriette, N. Chenouard, B. Dubertret and J.-C. Olivo-Marin. "Fast and automatic reconstruction of structured illumination microscopy images with multiscale products", 19th International Conference on Pattern Recognition, 2008. ICPR 2008., 2008. (bib) (pdf)?

F. de Chaumont, N. Chenouard, A. Mouret and P.-M. LLedo J.-C. Olivo-Marin. "A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification", Proc. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro ISBI 2008, 2008pp. 1007--1010, . (bib) (pdf)?