Journals
1. Chenouard**, N., Smal**, I, de Chaumont**, F., Maska, M., Sbalzarini, I.F., Gong, Y., Cardinale, J., Carthel, C., Coraluppi, S., Winter, M., Cohen, A.R., Godinez, W.J., Rohr, K., Kalaidzidis, Y., Liang, L., Duncan, J., Shen,, H., Xu, Y., Magnusson, K., Jaldén, J., Blau, H.M., Paul-Gilloteaux, P., Roudot, P., Kervrann, C., Waharte, F., Tinevez, J-Y., Shorte, S.L., Willemse, J., Celler, K., P. van Wezel, G., Dan, H-W., Tsai, Y-S., Ortiz de Solórzano, C., Olivo-Marin*, J.-C., and Meijering*, E. (2014) Objective comparison of particle tracking methods: Results and lessons from the first particle tracking challenge, Nature Methods, (in press)
2. Le Montagner, Y., Angelini, E., and Olivo-Marin, J.-C. (2014) An unbiased risk estimator for image denoising in the presence of mixed Poisson-Gaussian noise, IEEE Trans. Image Processing, (in press)
3. Pallet, N.,Chauvet, S., Chassé, J.F., Vincent, M., Avillach, P., Levi, C., Meas-Yedid, V., Olivo-Marin, J.-C., Nga-Matsogo, D., Beaune, P., Thervet, E. and Karras, A. (2014) Urinary retinol binding protein is a marker of the extent of interstitial kidney fibrosis, PlosOne, 9, 1, e84708
4. Montagnac, G., Meas-Yedid, V., Irondelle, M., Castro-Castro, A., Franco, M., Shida, T., Nachury, M., Benmerah, A., Olivo-Marin, J.-C., Chavrier, P. (2013) αTAT1 catalyzes microtubule acetylation at clathrin-coated pits, Nature, 502, 7472, 567-70
5. Soyer, M., Charles-Orszag, A., Lagache, T., Machata, S., Imhaus, A.F., Dumont, A., Millien, C., Olivo-Marin, J.-C., and Duménil, G. (2013) Early sequence of events triggered by the interaction of Neisseria meningitidis with endothelial cells, Cellular Microbiology, (in press)
6. Lagache, T., Lang, G., Sauvonnet, N., and Olivo-Marin, J.-C. (2013) Analysis of the spatial organization of molecules with robust statistics, PlosOne, 8, 12, e80914
7. Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2013) Multiple Hypothesis Tracking for Cluttered Biological Image Sequences, IEEE Trans. Pattern Analysis and Machine Intelligence, 35, 11, pp. 2736-50
8. Carré, C., Jacquier, C., Bougé, A-L., de Chaumont, F., Besnard-Guerin, C., Thomassin, H., Pidoux, J., Da Silva, B, Chalatsi, E., Zahra, S., Olivo-Marin, J.-C., Munier-Lehmann, H. and Antoniewski, C. (2013) AutomiG, a biosensor to detect alterations in miRNA biogenesis and in small RNA silencing guided by perfect target complementarity, PlosOne, 8, 9, e74296
9. Coura, R., Cressant, A., Xia, J., de Chaumont, F., Olivo-Marin, J.-C., Pelloux, Y., Dalley, J. W., and S. Granon (2013) Non-aggressive and adapted social cognition is controlled by the interplay between noradrenergic and nicotinic mechanisms in the prefrontal cortex, FASEB Journal, (in press)
10. Pop, S., Dufour, A., Le Garrec, J.-F., Ragni, C.V., Cimper, C., Meilhac, S.M., and Olivo-Marin, J.-C. (2013) Extracting 3D cell parameters from dense tissue environments: Application to the development of the mouse heart, Bioinformatics, 29, 6, pp. 772-9, (doi: 10.1093/bioinformatics/btt027)
11. Travier, L., Guadagnini, S., Gouin, E., Dufour, A., Chenal-Francisque, V., Cossart, P., Olivo-Marin, J.-C., Ghigo, J.-M., Disson, O., and Lecuit, M. (2013) ActA Promotes Listeria monocytogenes Aggregation, Intestinal Colonization and Carriage, PLoS Pathogens, 9, 1, (e1003131. doi:10.1371/journal.ppat.1003131)
12. Le Garrec, J.-F., Ragni, C.V., Pop, S., Dufour, A., Olivo-Marin, J.-C., Buckingham, M.E., Meilhac, S.M. (2013) Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart, Development, 140, 2, pp. 395-404
13. Basquin, C., Malardé, V., Mellor, P., Anderson, D., Meas-Yedid, V., Olivo-Marin, J.-C., Dautry-Varsat, A. and Sauvonnet, N. (2013) The signalling factor PI 3-kinase is a specific regulator of the clathrin-independent dynamin- dependent endocytosis of IL-2 receptors, Journal Cell Science, 126, 5, pp. 1099-108
14. Buisson, J., Chenouard, N., Lagache, T., Blisnick, T., Olivo-Marin, J.-C., Bastin, P. (2012) Intraflagellar transport proteins cycle between the flagellum and its base, Journal Cell Science, 126, 1, pp. 327-38
15. Mounier, J., Boncompain, G., Senerovic, L., Lagache, T., Chrétien, F., Perez, F., Kolbe, M., Olivo-Marin, J.-C., Sansonetti, P.J., and Sauvonnet, N. (2012) Shigella Effector IpaB-Induced Cholesterol Relocation Disrupts the Golgi Complex and Recycling Network to Inhibit Host Cell Secretion, Cell Host Microbe, 12, 3, pp.381-9
16. de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, and Olivo-Marin, J.-C. (2012) Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 9, 7, pp. 690-6
17. Pankajakshan, P., Kam, Z., Dieterlen, A., and Olivo-Marin, J.-C. (2012) Characterizing the 3-D field distortions in low numerical aperture fluorescence zooming microscope, Optics Express, 20, 9, pp. 9876-89
18. de Chaumont, F., Dos-Santos Coura, R., Serreau, P., Cressant, A., Chabout, J., Granon, S. and Olivo-Marin, J.-C. (2012) Computerized video analysis of social interactions between mice, Nature Methods, 9, 4, pp. 410-7
19. Hanf, W., Codas, R., Meas-Yedid, V., Berthiller, J., Buron, F., Chauvet, C., Brunet, M., Giroud, A., Olivo-Marin, J.-C., Hadj-Aissa, A., Faure, A., Petruzzo, P., Martin, X., Badet, O., and Morelon, E. (2012) Kidney graft outcome and quality (after transplantation) from uncontrolled deceased donors after cardiac arrest, American Journal of Transplantation, 12, 6, pp. 1541-50
20. Thibeaux, R., Dufour, A., Roux, P., Bernier, M., Baglin, A;C., Frileux, P., Olivo-Marin, J.-C., Guillen, N. and Labruyere, E. (2012) Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon, Cellular Microbiology, 22, 5, pp. 1007-15
21. Orieux, F., Sepulveda, E., Loriette, V., Dubertret, B., and Olivo-Marin, J.-C. (2012) Bayesian Estimation for Optimized Structured Illumination Microscopy, IEEE Trans. Image Processing, 21, 2, pp. 601-14
22. Olivo-Marin, J.-C., Unser, M., Blanc-Feraud, L., Laine, A., and Lelieveldt, B. (2011) Trends In Bioimaging and Signal Processing, IEEE Signal Processing Mag., 28, 6, pp. 200-1
23. Meas-Yedid V, Servais A, Noël LH, Panterne C, Landais P, Hervé N, Brousse N, Kreis H, Legendre C, Thervet E, Olivo-Marin* J.-C., Morelon* E. (2011) New Computerized Color Image Analysis for the Quantification of Interstitial Fibrosis in Renal Transplantation., Transplantation, 92, 8, pp. 890-9 (* equal contribution)
24. Bourgeois JP, Meas-Yeadid V, Lesourd AM, Faure P, Pons S, Maskos U, Changeux JP, Olivo-Marin, J.-C., and Granon S. (2011) Modulation of the Mouse Prefrontal Cortex Activation by Neuronal Nicotinic Receptors during Novelty Exploration but not by Exploration of a Familiar Environment, Cerebral Cortex, 22, 5, pp. 1007-15
25. Lézoray, O., Gurcan, M., Can, A., and Olivo-Marin, J.-C. (2011) Editorial of the special issue on whole slide microscopic image processing, Computerized Medical Imaging and Graphics, 35, 7-8, pp. 493-5
26. Braudeau J, Delatour B, Duchon A, Lopes-Pereira P, Dauphinot L, de Chaumont F, Olivo-Marin, J.-C., Dodd RH, Hérault Y, Potier MC (2011) Specific targeting of the GABA-A receptor {alpha}5 subtype by a selective inverse agonist restores cognitive deficits in Down syndrome mice, J Psychopharmacology, 25, 8, pp. 1030-42
27. Dufour, A., Thibeaux, R., Labruyere, E. Guillen, N., and Olivo-Marin, J.-C. (2011) 3D Active Meshes: fast discrete deformable models for cell tracking in 3D time-lapse microscopy, IEEE Trans. Image Processing, 20, 7, pp. 1925-37
28. Servais A, Meas-Yedid V, Noël, LH, Martinez, F, Panterne, C, Kreis, H, Zuber, J, Timsit, MO, Legendre C, Olivo-Marin, J.-C., Thervet E. (2011) Interstitial Fibrosis Evolution on Early Sequential Screening Renal Allograft Biopsies Using Quantitative Image Analysis, American Journal of Transplantation, 11, 7, pp. 1456-1463.
29. Gupta-Rossi, N., Ortica, S., Meas-Yedid, V., Heuss, S., Moretti, J., Olivo-Marin, J.-C., Israël, A., (2011) The adaptor-associated kinase 1, AAK1, is a positive regulator of the notch pathway. Journal Biology Chemistry, 286, 21, pp. 18720-30
30. Avale, M.E., Chabout, J., Pons, S., Serreau, P., de Chaumont, F., Olivo-Marin, J.-C., Bourgeois, J.-P., Maskos, U., Changeux, J.-P., Granon, S. (2011) Prefrontal nicotinic receptors control novel social interaction between mice. FASEB J., 25, 7, pp. 2145-55
31. Marim, M., Angelini, E., Olivo-Marin, J.-C., Atlan, M. (2011) Off-axis compressed holographic microscopy in low light conditions, Optics Letters, 36, 1, pp. 79-81
32. Feierstein, C., Lazarini, F., Wagner, S., Gabellec, M-M., de Chaumont, F., Olivo-Marin J.-C., Boussin, F.D., Lledo, P.-M., and Gheusi, G. (2010) Disruption of adult neurogenesis in the olfactory bulb affects social interaction but not maternal behavior, Frontiers in Behavioral Neuroscience, 1, 4,pp. 176-
33. Lasserre R, Charrin S, Cuche C, Danckaert A, Thoulouze MI, de Chaumont F, Duong T, Perrault N, Varin-Blank N, Olivo-Marin J.-C., Etienne-Manneville S, Arpin M, Di Bartolo V, Alcover A. (2010) Ezrin tunes T-cell activation by controlling Dlg1 and microtubule positioning at the immunological synapse, EMBO J., 29, 14, pp. 2301-14
34. Grassart, A, Meas-Yedid, V, Dufour, A, Olivo-Marin, J.-C., Dautry-Varsat, A, Sauvonnet, N. (2010) Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis, Traffic, 11, 8, pp. 1079-91
35. Marim, M., Atlan, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Compressed Sensing with off-axis, frequency-shifting holography, Optics Letters, 35, 6, pp. 871-3
36. Melki, M.-T., Saïdi, H., Dufour, A., Olivo-Marin, J.-C. and Gougeon, M.-L. (2010) Escape of HIV-1-Infected Dendritic Cells from TRAIL-Mediated NK Cell Cytotoxicity. A pivotal Role of HMGB1, PLoS Pathogens, 6, 4, e1000862
37. Berlemont, S. and Olivo-Marin, J.-C. (2010) Combining Local Filtering and Multiscale Analysis for Edge, Ridge and Curvilinear Objects Detection, IEEE Trans. Image Processing, 19, 1, pp. 74-84
38. Ghoul, BE, Squalli, T, Servais, A, Elie, C, Meas-Yedid, V, Trivint, C, Vanmassenhove, J, Grünfeld, JP, Olivo-Marin, J.-C., Thervet, E, Noël, LH, Prié, D, Fakhouri, F. (2010) Urinary procollagen III aminoterminal propeptide (PIIINP): a fibrotest for the nephrologist, Clin J Am Soc Nephrol., 5, 2, pp. 205-10
39. Tolu S, Avale ME, Nakatani H, Pons S, Parnaudeau S, Tronche F, Vogt A, Monyer H, Vogel R, de Chaumont F, Olivo-Marin, J.-C., Changeux JP., Maskos U. (2010) A versatile system for the neuronal subtype specific expression of lentiviral vectors, FASEB Journal, 24, 3, pp. 723-730
40. Servais A, Meas-Yedid V, Toupance O, Lebranchu Y, Thierry A, Moulin B, Etienne I, Presne C, Hurault de LB, Le Pogamp P, Le Meur Y, Glotz D, Hayem C, Olivo-Marin, J.-C., Thervet E. (2009) Interstitial fibrosis quantification in renal transplant recipients randomized to continue cyclosporine or convert to sirolimus, American Journal of Transplantation, 9, 11, pp. 2552-2560.
41. Servais, A, Meas-Yedid, V, Morelon, E, Strupler, M, Schanne-Klein, MC, Legendre, C, Olivo-Marin, J.-C., Thervet E. (2009) Apports récents des techniques de quantification de la fibrose pour l’examen anatomo-pathologique en transplantation rénale, Médecine Sciences, 25, 11, pp. 945-950.
42. Lazarini F, Mouthon MA, Gheusi G, de Chaumont F, Olivo-Marin JC, Lamarque S, Abrous DN, Boussin FD, Lledo PM (2009) Cellular and behavioral effects of cranial irradiation of the subventricular zone in adult mice, PlosOne, 4, 9, e7017
43. Pankajakshan, P., Zhang, B., Blanc-Féraud, L., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2009) Blind deconvolution for thin layered confocal imaging, Applied Optics, 48, 22, pp. 4437-4448
44. Mhlanga, M., Bratu, P., Genovesio, A., Rybarska, A., Chenouard, N., Nehrbass, U., and Olivo-Marin, J.-C. (2009) In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte, PlosOne, 4, 7, e6241
45. Chenouard, N., Dufour, A., and Olivo-Marin, J.-C. (2009) Tracking algorithms chase down pathogens, Biotechnology Journal, 4, 6, pp. 838-845
46. Gousset, K., Schiff, E., Langevin, C., Marijanovic, Z., Caputo, A., Browman, DT, Chenouard, N., de Chaumont, F., Martino, A., Enninga, J., Olivo-Marin J.-C., Mannel, D., and Zurzolo, C. (2009) Prions hijack tunneling nanotubes for intercellular spread, Nature Cell Biology, 11, 3, pp. 328-36
47. Viklund, IM, Aspenström, P, Meas-Yedid, V, Zhang, B, Kopec, J, Agren, D, Schneider, G, D’Amato, M, Olivo-Marin J.-C., Sansonetti, P, Van Nhieu, GT, Pettersson, S. (2009) WAFL, a new protein involved in regulation of early endocytic transport at the intersection of actin and microtubule dynamics, Experimental Cell Research, 315, 6, pp. 1040-52
48. Nicolas, E, Chenouard, N, Olivo-Marin, J.-C., and Guichet A. (2009) A Dual Role for Actin and Microtubule Cytoskeleton in the Transport of Golgi Units from the Nurse Cells to the Oocyte Across Ring Canals, Molecular Biology of the Cell, 20, 1, pp. 556-68
49. Berger, A.B., Cabal, G.G., Fabre, E., Duong, T., Buc, H., Nehrbass, U., Olivo-Marin, J.-C., Gadal, O., Zimmer, C. (2008) High-resolution statistical mapping reveals gene territories in live yeast, Nature Methods, 5, 12, pp. 1031-7
50. Mouret A, Gheusi G, Gabellec MM, de Chaumont F, Olivo-Marin, J.-C., and Lledo PM (2008) Learning and survival of newly generated neurons: when time matters, Journal of Neuroscience, 28, 45, pp. 11511-6
51. Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2007) Gaussian approximations of fluorescence microscope point-spread function models, Applied Optics, 46, 10, pp. 1819-29
52. Servais, A., Meas-Yedid, V., Buchler, M., Morelon, E., Olivo-Marin, J.-C., Lebranchu, Y., Legendre, C. and Thervet, E. (2007) Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine , Transplantation, 84, 12, pp. 1595-1601
53. Glory, E., Derocle, G., Ollivier, N., Meas-Yedid, V., Stamon, G., Pinset, C., and Olivo-Marin, J.-C. (2007) An automatic image analysis approach to quantify stained cell cultures, Cellular and Molecular Biology, 53, 9, pp. 20-27
54. Arhel, N., Genovesio, A., Kim, K-A., Miko, S., Perret, E., Olivo-Marin, J.-C., Shorte, S. and Charneau, P. (2006) Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes, Nature Methods, 3, 10, pp. 817-824
55. Alonso, M., Viollet, C., Gabellec, M.M., Meas-Yedid, V, Olivo-Marin, J.-C., and Lledo, PM. (2006) Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb, Journal of Neuroscience, 26, 41, pp. 10508-10513.
56. Cabal, G., Genovesio, A., Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne, A., Buc, H., Feuerbach-Fournier, F., Olivo-Marin, J.-C., Hurt, E.C., and Nehrbass, U. (2006) SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope, Nature, 441, pp. 770-773
57. Mairey, E., Genovesio, A., Donnadieu, E., Bernard, C., Jaubert, F., Pinard, E., Seylaz, J., Olivo-Marin, J.-C., Nassif, X., and Dumenil, G. (2006) Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier, Journal of Experimental Medicine, 203, 8, pp. 1939-1950
58. Genovesio, A., Liedl, T., Emiliani, V., Parak, W., Coppey-Moisan, M. and Olivo-Marin, J.-C. (2006) Multiple particle tracking in 3D+t microscopy : method and application to the tracking of endocytozed Quantum Dots, IEEE Trans. Image Processing, 15, 5, pp. 1062-1070
59. Zimmer, C., Zhang, B., Dufour, A., Thébaud, A., Berlemont, S., Meas-Yedid, V., and Olivo-Marin, J.-C (2006) On the digital trail of mobile cells, IEEE Signal Processing Mag., 23, 3, pp. 54-62
60. Dey, N., Blanc-Feraud, L., Zimmer, C., Roux, P., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2006) Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution, Microscopy Research and Techniques, 69, 4, pp. 260-266
61. Blazquez, S., Zimmer, C, Guigon, G., Olivo-Marin, J.-C., Guillen, N., and Labruyere E. (2006) Human Tumor Necrosis Factor is a Chemoattractant for the Parasite Entamoeba histolytica, Infection and Immunity, 74, 2, pp. 1407-1411
62. Therizols, P., Fairhead, C., Cabal, GG., Genovesio, A., Olivo-Marin, J.-C., Dujon, B., and Fabr,e E. (2006) Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region, Journal of Cell Biology, 172, 2, pp. 189-199
63. Meas-Yedid, V., Servais, A., Noël, L.H., Brousse, N., Patey, N., Landais, P., Kreis, H., Olivo-Marin, J.-C., and Morelon, E. (2006) L’apport des techniques de quantification de la fibrose pour l’examen anatomopatholoqgiue en transplantation rénale, Le Courrier de l a Transplantation, 6, pp. 86-92
64. Zimmer, C. and Olivo-Marin, J.-C (2005) Coupled parametric active contours, IEEE Trans. Pattern Analysis and Machine Intelligence, 27, 11, pp. 1838-1842
65. Dufour, A., Shinin, V., Tajbakhsh, S., Guillén, N., Olivo-Marin, J.-C. and Zimmer, C. (2005) Segmenting and tracking fluorescent cells in 4D microscopy with coupled active surfaces, IEEE Trans.Image Processing, 14, 9, pp. 1396-1410
66. Peltekian, C., Gordien, E., Garreau, F., Meas-Yedid, V., Soussan, P., Willams, V., Chaix, M.-L., Olivo-Marin, J.-C., Bréchot, C., and Kremsdorf, K. (2005) Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice, Journal of Hepatology, 43, 6, pp. 965-972
67. Lemasson, M., Saghatelyan, A., Olivo-Marin, J.-C., and Lledo, P.-M. (2005) Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb, Journal of Neuroscience, 25, pp. 6816-6825
68. Coudrier, E., Amblard, F., Zimmer, C., Olivo-Marin, J.-C., and Guillen, N. (2005) Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica, Cellular Microbiology, 7, 1, pp. 19-27
69. Bougnères, L., Girardin, S.E., Weed, S.A., Karginov, A.V., Olivo-Marin, J.-C., Parsons, J.T., Sansonetti, P.J., Tran Van Nhieu, G. (2004) Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells, Journal of Cell Biology, 166, pp. 225-235
70. Frishneck, F., Baldacci, P., Martin, B., Zimmer, C., Thiberge, S., Olivo-Marin, J.-C., Shorte, S.L., and Ménard, R. (2004) Imaging movement of malaria parasites during transmission by Anopheles mosquitoes, Cellular Microbiology, 6, 7, pp.687-694
71. Fernandez, M.I., Pedron, T., Tournebize, R., Olivo-Marin, J.-C., Sansonetti, P., and Phalipon, A. (2003) Anti-inflammatory role for intracellular dimeric immunoglobulin A by neutralization of lipopolysaccharide in epithelial cells, Immunity, 18, 6, pp. 739-749
72. Fourgeaud, L, Bessis, A.S., Rossignol, F, Pin, JP, Olivo-Marin, J.-C., Hemar, A.(2003) The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin independent pathway, Journal of Biological Chemistry, 278, 14, pp. 12222-12230
73. Labruyere, E, Zimmer, C, Galy, V, Olivo-Marin, J.-C., Guillen, N. (2003) EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis, Journal of Cell Science, 116, 1, pp.61-71
74. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours : a tool for cell-based drug testing, IEEE Trans. on Medical Imaging, 21, 10, pp. 1212-1221
75. Olivo-Marin, J.-C. (2002) Extraction of spots in biological images using multiscale products, Pattern Recognition, 35, 9, pp. 1989-1996
76. Das, V, Nal, B, Roumier, A, Meas-Yedid, V, Zimmer, C, Olivo-Marin, J.-C., Roux, P, Ferrier, P, Dautry-Varsat, A, Alcover, A (2002) Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation, Immunological Reviews, 189, 11, pp. 123-35.
77. Figueiredo, L., Freitas-Junior, L., Olivo-Marin, J.-C.,.and Scherf, A. (2002) A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation, EMBO Journal, 21, 4, pp. 815-824
78. Feuerbach, F., Galy, V., Treelles-Stricken, E., Fromont-Racine, M.,Jacquier, A., Gilson, E., Olivo-Marin, J.-C., Scherthan, H., and Nerhbass,U. (2002) Yeast telomers control transcriptional states by spatial positioning, Nature Cell Biology, 4, pp 214-221
79. Roumier, A., Olivo-Marin, J.-C., Arpin, M., Michel, F., Martin, M., Mangeat, P., Acuto, O., Dautry-Varsat, A. and Alcover, A. (2001) The membrane-microfilament linker ezrin is involved in the formation of the immunological synapse and in T cell activation, Immunity, 15, pp. 715-728
80. Murphy, C., Saffrich, R, Olivo-Marin, J.-C., Giner, A., Ansorge, W., Fotsis, T. and Zerial, M. (2001) Dual function of RhoD in vesicular movement and cell motility, European Journal of Cell Biology, 80, 6, pp. 391-398
81. Galy, V., Olivo-Marin, J.-C., Scherthan, H., Doyle, V., Rascalou, N.and Nerhbass, U. (2000) Nuclear pore complexes in the organization of silent telomeric chromatin, Nature, 403, pp. 108-112
82. Voigt, H., Olivo, J.-C., Sansonetti, P., and Guillen, N. (1999) Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes, Journal of Cell Science , 112, 8, pp. 1191-1201
Articles
1. Simoncini, C., Lecomte, T., Thibeaux, R., Guillen, N., Dufour, A. and Olivo-Marin, J.-C. (2014) Fluid dynamics modeling of cell and membranes deformations, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2014, Beijing , April 2014, (accepted)
2. Tournemenne, R., Ducroz, C., Olivo-Marin, J.-C. and Dufour, A. (2014) 3D shape analysis using overcomplete spherical wavelets: application to bleb detection in cell biology, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2014, Beijing , April 2014, (accepted)
3. Lopez-Yunta, M., Lagache, T., Santi-Rocca, J., and Olivo-Marin, J.-C. (2014) A statistical analysis of spatial clustering along cell filaments using Ripley’s K function, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2014, Beijing , April 2014, (accepted)
4. Ducroz, C., Olivo-Marin, J.-C. and Dufour, A. (2013) Automatic detection of 3D cell protrusions using spherical wavelets, IEEE Intern. Conf. on Image Processing, ICIP 2013, Melbourne, Septembre 2013
5. Le Montagner, Y., Angelini, E., and Olivo-Marin, J.-C. (2013) Biological video reconstruction using linear or non-linear Fourier measurements, Proceedings of SPIE International Symposium, Wavelets XV, Conf. 8858, San Diego, August 2013
6. Lagache, T., Meas-Yedid, V., and Olivo-Marin, J.-C. (2013) A statistical analysis of spatial colocalization using Ripley’s K function, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2013, San Francisco, April 2013
7. Le Montagner, Y., Angelini, E., and Olivo-Marin, J.-C. (2013) Phase retrieval with sparsity priors and application to microscopy video reconstruction, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2013, San Francisco, April 2013
8. Yang, G., and Olivo-Marin, J.-C. (2013) Image-based representation and modeling of spatiotemporal cell dynamics, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2013, San Francisco, April 2013
9. Le Montagner, Y., Angelini, E., and Olivo-Marin, J.-C. (2012) Video reconstruction using compressed sensing measurements and 3D Total Variation regularization for bio-imaging applications, IEEE Intern. Conf. on Image Processing, ICIP 2012, Orlando, Septembre 2012,
10. Lecomte, T., and Olivo-Marin, J.-C. (2012) Fluid optical flow for forces and pressure field estimation in cellular biology, IEEE Intern. Conf. on Image Processing, ICIP 2012, Orlando, Septembre 2012,
11. Ducroz, C., Olivo-Marin, J.-C. and Dufour, A. (2012) Characterization of cell shape and deformation in 3D using spherical harmonics, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2012, Barcelona, May 2012, pp. 848-51
12. Le Montagner, Y., Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2011) Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing, IEEE Intern. Conf. on Image Processing, ICIP 2011, Brussels, September 2011, pp. 3134-37
13. Pop, S., Dufour, A., and Olivo-Marin, J.-C. (2011) Image filtering using anisotropic structure tensor for cell membrane enhancement in 3d microscopy, IEEE Intern. Conf. on Image Processing, ICIP 2011, Brussels, September 2011, pp. 2085-88
14. Ducroz, C, Olivo-Marin, J.-C. and Dufour A. (2011) Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences, IEEE EMBC 2011, Boston, September 2011, pp. 6619-22.
15. Le Montagner, Y., Angelini, E., and Olivo-Marin, J.-C. (2011) Comparison of reconstruction algorithms in compressed sensing applied to biological imaging, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2011, Chicago, April 2011
16. de Chaumont, F., Dallongeville, S., and Olivo-Marin, J.-C. (2011) ICY; a new open-source community image processing software, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2011, Chicago, April 2011
17. Hervé, N., Servais, A., Thervet, E., Olivo-Marin, J.-C. and Meas-Yedid, V. (2011) Statistical color texture descriptors for histological images analysis, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2011, Chicago, April 2011
18. Pankajakshan, P., Dieterlen, A., Engler, G., Kam, Z., Blanc-Féraud, L., Zerubia, J., and Olivo-Marin, J.-C. (2011) Wavefront sensing for aberration modeling in fluorescence macroscopy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2011, Chicago, April 2011
19. Pop, S., Dufour, A., Le Garrec, J-F., Ragni, C., Buckingham, M., Meilhac, S., and Olivo-Marin, J.-C. (2011) A fast and automated framework for extraction of nuclei from cluttered 3d images in fluorescence microscopy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2011, Chicago, April 2011
20. Pankajakshan, P., Dieterlen, A., Engler, G., Kam, Z., Blanc-Féraud, L., Zerubia, J., and Olivo-Marin, J.-C. (2010) Point-spread function model for fluorescence macroscopy imaging, IEEE Asilomar Conference on Signals, Systems, and Computers 2010, Asilomar, Nov. 2010
21. Chenouard, N., Buisson, J., Bloch, I., Bastin, P. and Olivo-Marin, J.-C. (2010) Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images, IEEE Intern. Conf. on Image Processing, ICIP 2010, HongKong, October 2010
22. de Chaumont, F., Dallongeville, S., Chenouard, N., and Olivo-Marin, J.-C. (2010) Tracking multiple articulated objects using physics engines : improvement using multiscale décomposition and quadtrees, IEEE Intern. Conf. on Image Processing, ICIP 2010, HongKong, October 2010
23. Hervé, N., Servais, A., Thervet, E., Olivo-Marin, J.-C. and Meas-Yedid, V. (2010) Improving histology images segmentation through spatial constraints ans supervision, IEEE Intern. Conf. on Image Processing, ICIP 2010, HongKong, October 2010
24. Marim, M., Atlan, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Compressed sensing applications for biological microscopy, IEEE Workshop on Signal Processing Systems, SiPS 2010, Cupertino, October 2010
25. Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Denoising in fluorescence microscopy using compressed sensing with multiple reconstructions and non-local merging, IEEE EMBC 2010, Buenos-Aires, September 2010
26. Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Compressed Sensing for Digital Holographic Microscopy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2010, Rotterdam, April 2010, (Best Student Paper Award)
27. Blanc-Féraud, L., Pankajakshan, P., Carlavan, M., Kam, Z., Zerubia, J., and Olivo-Marin, J.-C. (2010) Methods for confocal microscopic 3D image restoration, SIAM Conference on Imaging Science IS10, Chicago, Illinois, April 12-14, 2010
28. Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2009) Compressed Sensing in microscopy with random projections in the Fourier domain, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009
29. Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Particle tracking in fluorescent microscopy images improved by morphological source separation, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009
30. de Chaumont, F., Dufour, A., and Olivo-Marin, J.-C. (2009) Tracking articulated objects with physics engines, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009
31. Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Multiple Hypothesis tracking in cluttered conditions, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009
32. Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2009) Compressed Sensing in Biological Microscopy, SPIE International Symposium, Wavelets XIII, Conf. 7446, San Diego, August 2009
33. Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Multiple Hypothesis Tracking in microscopy images, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2009, Boston, June 2009, pp.
34. de Chaumont, F., Dufour, A., Serreau, P., Chabout, J., Munter, S., Frischknecht, F., Granon, S. and Olivo-Marin, J.-C. (2009) Using physics engines to track objects in images, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2009, Boston, June 2009, pp.
35. Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2009) A compressed sensing approach for biological microscopic image processing, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2009, Boston, June 2009,
36. Dufour, A., Meas-Yedid, V., Grassard, A. and Olivo-Marin, J.-C. (2008) Automated quantification of cell endocytosis using active contours and wavelets, IAPR Intern. Conf. on Pattern Recogn. ICPR 2008 , Tampa, FL, Dec. 2008, I, pp.
37. Chenouard, N., Vernhettes, I., Bloch, I. and Olivo-Marin, J.-C. (2008) Morphological source separation for particle tracking in complex biological environments, IAPR Intern. Conf. on Pattern Recogn. ICPR 2008 , Tampa, FL, Dec. 2008, I, pp.
38. Tauber, C., Gardeazabal, P., Loriette, V., Chenouard, N., Dubertret, B. and Olivo-Marin, J.-C. (2008) Fast and Automatic Reconstruction of Structured Illumination Microscopy Images with Multiscale Products, IAPR Intern. Conf. on Pattern Recogn. ICPR 2008 , Tampa, FL, Dec. 2008, I, pp.
39. Dufour, A., and Olivo-Marin, J.-C. (2008) Tracking Live Cells in 4D Microscopy: Active Surfaces vs. Active Meshes, IEEE Asilomar Conference on Signals, Systems, and Computers 2008, Asilomar, Nov. 2008
40. Chenouard, N., Bloch, I. and Olivo-Marin, J.-C. (2008) Feature-aided particle tracking, IEEE Intern. Conf. on Image Processing 2008, San Diego, Sept. 2008, pp. 1796-9
41. Chenouard, N., de Chaumont, F., Bloch, I. and Olivo-Marin, J.-C. (2008) Improving 3D tracking in microscopy by joint estimation of kinetic an image models, MICCAI International Workshop on Microscopic Image Analysis with Applications in Biology, MIAAB 2008, New York, Sept. 2008
42. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2008) Detection of full length microtubules in live microscopy images, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2008, Paris, May 2008, pp. 851-4
43. de Chaumont, F., Chenouard, N., Mouret, A., Lledo, P.-M. and Olivo-Marin, J.-C. (2008) A multi-threaded program architecture for an asynchronous and highly responsive gui for automatic neuronal survival quantification, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2008, Paris, May 2008, pp. 1007-10
44. Pankajakshan, P., Zhang, B., Blanc-F´eraud, L., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2008) Blind deconvolution for diffraction-limited fluorescence microscopy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2008, Paris, May 2008, pp. 740-3
45. Zhang, B., Chenouard, N., Olivo-Marin, J.-C. and Meas-Yedid, V. (2008) Statistical colocalization in biological imaging with false discovery control, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2008, Paris, May 2008, pp. 1327-30
46. Marim, M., Zhang, B., Olivo-Marin, J.-C. and Zimmer, C. (2008) Improving single particle localization with an empirically calibrated gaussian kernel, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2008, Paris, May 2008, pp. 1003-6
47. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of linear structures in biological images, IEEE Asilomar Conference on Signals, Systems, and Computers2007, Asilomar, Nov. 2007, pp. 1279-83
48. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of DNA Filaments in Fluorescent Microscopy Using Feature-adapted Beamlet Transforms, MICCAI International Workshop on Microscopic Image Analysis with Applications in Biology, MIAAB 2007, Piscataway, Sept. 2007
49. Zhang, B., Fahdili, J., Starck, J.-L. and Olivo-Marin, J.-C. (2007) Multiscale variance-stabilizing transform for mixed-Poisson-Gaussian processes and its applications in bioimaging, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007, pp. 233-6
50. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Feature-Adapted Fast Slant Stack, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007, pp. 57-60
51. Pankajakshan, P., Zhang, B., Blanc-F´eraud, L., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2007) Parametric Blind Deconvolution for Confocal Laser Scanning Microscopy, IEEE Intern. Conf. on Engineering in Biology and Medicine 2007, Lyon, August. 2007, pp.
52. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of curvilinear objects in biological noisy images using Feature-Adapted Fast Slant Stack, SPIE, International Conference on Wavelets XII 2007, San Diego, August 2007, pp.
53. Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of Curvilinear objects in Noisy Image using Feature-Adapted Beamlet Transform, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2007, Honolulu, April 2007, pp.
54. Pécréaux, J., Zimmer, C. and Olivo-Marin, J.-C. (2006) Biophysicall active contours for cell tracking I : Tension and bending, IEEE Intern. Conf. on Image Processing 2006, Atlanta, Oct. 2009, pp. –
55. Olivo-Marin, J.-C. (2006) An overview of image analysis in multidimensional biological microscopy, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2006, Toulouse, May 2006, pp.
56. Glory, E., Meas-Yedid, V., Pinset, C., Stamon, G., and Olivo-Marin, J.-C. (2006) Automated image-based screening of cell cultures for cell therapy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 259-62
57. Zhang, B., Enninga, J., Olivo-Marin, J.-C., and Zimmer, C .(2006) Automated super-resolution detection of fluorescent rods in 2D, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 1296-9
58. Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2006) A study of Gaussian approximations of microscopic PSF, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2006, 6090, pp. K1-11
59. Glory, E., Meas-Yedid, V., Pinset, C., Olivo-Marin, J.-C. and Stamon, G. (2005) A quantitative criterion to evaluate color segmentations application to cytological images, Advanced Concepts for Intelligent Vision Systems, ACIVS 2005, Antwerp, Belgium, September 20-23, 2005, pp. 227-32
60. Zimmer, C., Zhang, B., Blazquez, S. Labruyère, E. Frischknecht, F., Ménard, R., Guillén, N. and Olivo-Marin, J.-C. (2004) Automated cell tracking tools for quantitative motility studies, ISIS International Symposium On Interdisciplinary Science, Natchitoches, Louisiana (USA), 6-8 October 2004, AIP Conference Proceedings Vol. 755, pp. 177-84
61. Genovesio, A., Belhassine, Z. and Olivo-Marin, J.-C. (2004) Adaptive gating in gaussian bayesian multi-target tracking, IEEE Intern. Conf. on Image Processing 2004, Singapore, Oct. 2004
62. Meas-Yedid, V., Glory, E., Morelon, E., Pinset, C., Stamon, G. and Olivo-Marin, J.-C. (2004) Automatic color space selection for biological image segmentation, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
63. Genovesio, A., and Olivo-Marin, J.-C. (2004) Split and merge data association filter for dense multi-target tracking, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004
64. Zhang, B., Zimmer, C., and Olivo-Marin, J.-C. (2004) Tracking fluorescent cells with coupled geometric active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004 , Arlington, April 2004, pp.476-9
65. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Interacting multiple model based method to track moving fluorescent biological spots, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1239-42
66. Dey, N., Blanc-Fraud, L., Zimmer, C., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2004) A deconvolution method for confocal microscopy with total variation regularization, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004 , Arlington, April 2004, pp. 1223-6
67. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Suivi de multiples taches fluorescentes par interaction de differents modèles de mouvement en vidéomicroscopie, , Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2004, Toulouse, janvier 2004, III,
68. Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2003) Tracking of multiple fluorescent biological objects in three dimensional video microscopy, IEEE Intern. Conf. on Image Processing 2003, Barcelona, Sept. 2003, I, pp.1105-8
69. Genovesio, A., and Olivo-Marin, J.-C. (2003) Tracking fluorescent spots in biological video microscopy, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 100-11
70. Féral, M., Zimmer, C., and Olivo-Marin, J.-C. (2003) Cell tracking: explicit versus implicit active contour methods, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 69-77
71. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Improving active contours for segmentation and tracking of motile cells in videomicroscopy, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002 , Québec, Aug. 2002, II, pp. 286-9
72. Meas-Yedid, V., Tilie, S. and Olivo-Marin, J.-C. (2002) Color image segmentation based on Markov Random Field Clustering for histological image analysis, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002 , Québec, Aug. 2002, I, pp. 796-9
73. Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Quantitative analysis of cellular shape and motility parameters with improved active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2002 , Whashington DC, July. 2002, pp. 859-62
74. Zimmer, C., Meas-Yedid, V., Glory, E., Labruyère, E., Guillén, N. and Olivo-Marin, J.-C. (2002) Analyse de la forme et du mouvement cellulaires par les contours actifs, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2002, Angers, janvier 2002, II, pp. 435-42
75. Cuartero, G., Meas-Yedid, V., Galy, V., Nehrbass, U. and Olivo-Marin, J.-C. (2001) Three dimensional spot detection by multiscale analysis. IEEE Intern. Conf. on Image Processing 2001, Oct. 2001, I, pp. 317-20
76. Zimmer, C., Meas-Yedid, V., Labruyère, E., Guillen, N., and Olivo-Marin, J.-C. (2001)Active contours applied to the shape and motion analysis of amoeba, SPIE, Mathematical Modelling, Vision Geometry X, San Diego, August 2001, pp. 124-34
77. Meas-Yedid, V., Cloppet, F., Roumier, A., Alcover, A., Olivo-Marin, J.-C. and Stamon, G. (2001) Quantitative microscopic image analysis by active contours, Visual Interface, VI’2001, Ottawa, June 2001, pp. 277-84
78. Meas-Yedid, V., Zimmer, C. and Olivo-Marin, J.-C. (2001) Active contours for the motility analysis in biological microscopy images, Intern. Conf. on Image and Signal Processing, ICISP’2001, Morrocco, May 2001, pp. 230-9
79. Meas-Yedid, V. and Olivo-Marin, J.-C. (2000) Active contours for the movement and motility analysis of biological objects. IEEE Intern. Conf. on Image Processing 2000 , I, pp. 172-5
