2010

Melki, M.-T., Saïdi, H., Dufour, A., Olivo-Marin, J.-C. and Gougeon, M.-L. (2010) Escape of HIV-1-Infected Dendritic Cells from TRAIL-Mediated NK Cell Cytotoxicity. A pivotal Role of HMGB1, PLoS Pathogens (accepted)

Marim, M., Atlan, M., Angelini, E., and Olivo-Marin, J.-C. (2010) Compressed Sensing with off-axis, frequency-shifting holography, Optics Letters, 35, 6, pp. 871-873

Berlemont, S. and Olivo-Marin, J.-C. (2010) Combining Local Filtering and Multiscale Analysis for Edge, Ridge and Curvilinear Objects Detection, IEEE Trans. Image Processing, 19, 1, pp. 74-84

2009

Servais A, Meas-Yedid V, Toupance O, Lebranchu Y, Thierry A, Moulin B, Etienne I, Presne C, Hurault de LB, Le Pogamp P, Le Meur Y, Glotz D, Hayem C, Olivo-Marin, J.-C., Thervet E. (2009) Interstitial fibrosis quantification in renal transplant recipients randomized to continue cyclosporine or convert to sirolimus, American Journal of Transplantation, 9, 11, pp. 2552-2560.

Servais, A, Meas-Yedid, V, Morelon, E, Strupler, M, Schanne-Klein, MC, Legendre, C, Olivo-Marin, J.-C., Thervet E. (2009) Apports récents des techniques de quantification de la fibrose pour l’examen anatomo-pathologique en transplantation rénale, Médecine Sciences, 25, 11, pp. 945-950.

Tolu S, Avale ME, Nakatani H, Pons S, Parnaudeau S, Tronche F, Vogt A, Monyer H, Vogel R, de Chaumont F, Olivo-Marin, J.-C., Changeux JP., Maskos U. (2009) A versatile system for the neuronal subtype specific expression of lentiviral vectors, FASEB Journal, Oct 30. [Epub ahead of print]

Lazarini F, Mouthon MA, Gheusi G, de Chaumont F, Olivo-Marin JC, Lamarque S, Abrous DN, Boussin FD, Lledo PM (2009) Cellular and behavioral effects of cranial irradiation of the subventricular zone in adult mice, PlosOne, 4, 9, e7017

Pankajakshan, P., Zhang, B., Blanc-Féraud, L., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2009) Blind deconvolution for thin layered confocal imaging, Applied Optics, 48, 22, pp. 4437-4448

Mhlanga, M., Bratu, P., Genovesio, A., Rybarska, A., Chenouard, N., Nehrbass, U., and Olivo-Marin, J.-C. (2009) In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte, PlosOne, 4, 7, e6241

Chenouard, N., Dufour, A., and Olivo-Marin, J.-C. (2009) Tracking algorithms chase down pathogens, Biotechnology Journal, 4, 6, pp. 838-845

Gousset, K., Schiff, E., Langevin, C., Marijanovic, Z., Caputo, A., Browman, DT, Chenouard, N., de Chaumont, F., Martino, A., Enninga, J., Olivo-Marin J.-C., Mannel, D., and Zurzolo, C. (2009) Prions hijack tunneling nanotubes for intercellular spread, Nature Cell Biology, 11, 3, pp. 328-336

Viklund, IM, Aspenström, P, Meas-Yedid, V, Zhang, B, Kopec, J, Agren, D, Schneider, G, D'Amato, M, Olivo-Marin J.-C., Sansonetti, P, Van Nhieu, GT, Pettersson, S. (2009) WAFL, a new protein involved in regulation of early endocytic transport at the intersection of actin and microtubule dynamics, Experimental Cell Research, 315, 6, pp. 1040-1052

Nicolas, E, Chenouard, N, Olivo-Marin, J.-C., and Guichet A. (2009) A Dual Role for Actin and Microtubule Cytoskeleton in the Transport of Golgi Units from the Nurse Cells to the Oocyte Across Ring Canals, Molecular Biology of the Cell, 20, 1, pp. 556-568

2008

Berger, A.B., Cabal, G.G., Fabre, E., Duong, T., Buc, H., Nehrbass, U., Olivo-Marin, J.-C., Gadal, O., Zimmer, C. (2008) High-resolution statistical mapping reveals gene territories in live yeast., Nature Methods, 5, 12, pp. 1031-7

Mouret A, Gheusi G, Gabellec MM, de Chaumont F, Olivo-Marin, J.-C., and Lledo PM (2008) Learning and survival of newly generated neurons: when time matters, Journal of Neuroscience, 28, 45, pp. 11511-11516

2007

Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2007) Gaussian approximations of fluorescence microscope point-spread function models, Applied Optics, 46, 10, pp. 1819-1829. (.pdf)

Servais, A., Meas-Yedid, V., Buchler, M., Morelon, E., Olivo-Marin, J.-C., Lebranchu, Y., Legendre, C. and Thervet, E. (2007) Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine, Transplantation, 84, 12, pp. 1595-1601

Glory, E., Derocle, G., Ollivier, N., Meas-Yedid, V., Stamon, G., Pinset, C., and Olivo-Marin, J.-C. (2007) An automatic image analysis approach to quantify stained cell cultures, Cellular and Molecular Biology, 53, 9, pp. 20-27

2006

Arhel, N., Genovesio, A., Kim, K-A., Miko, S., Perret, E., Olivo-Marin, J.-C., Shorte, S. and Charneau, P. (2006) Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes, Nature Methods, 3, 10, pp. 817-824

Alonso, M., Viollet, C., Gabellec, M.M., Meas-Yedid, V, Olivo-Marin, J.-C., and Lledo, PM. (2006) Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb, Journal of Neuroscience, 26, 41, pp. 10508-10513.

Cabal, G., Genovesio, A., Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne, A., Buc, H., Feuerbach-Fournier, F., Olivo-Marin, J.-C., Hurt, E.C., and Nehrbass, U. (2006) SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope, Nature, 441, pp. 770-773

Mairey, E., Genovesio, A., Donnadieu, E., Bernard, C., Jaubert, F., Pinard, E., Seylaz, J., Olivo-Marin, J.-C., Nassif, X., and Dumenil, G. (2006) Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier, Journal of Experimental Medicine, 203, 8, pp. 1939-1950

Genovesio, A., Liedl, T., Emiliani, V., Parak, W., Coppey-Moisan, M. and Olivo-Marin, J.-C. (2006) Multiple particle tracking in 3D+t microscopy : method and application to the tracking of endocytozed Quantum Dots, IEEE Trans. Image Processing, 15, 5, pp. 1062-1070

Zimmer, C., Zhang, B., Dufour, A., Thébaud, A., Berlemont, S., Meas-Yedid, V., and Olivo-Marin, J.-C (2006) On the digital trail of mobile cells, IEEE Signal Processing Mag., 23, 3, pp. 54-62. (.pdf)

Dey, N., Blanc-Feraud, L., Zimmer, C., Roux, P., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2006) Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution, Microscopy Research and Techniques, 69, 4, pp. 260-266

Blazquez, S., Zimmer, C, Guigon, G., Olivo-Marin, J.-C., Guillen, N., and Labruyere E. (2006) Human Tumor Necrosis Factor is a Chemoattractant for the Parasite Entamoeba histolytica, Infection and Immunity, 74, 2, pp. 1407-1411

Therizols, P., Fairhead, C., Cabal, GG., Genovesio, A., Olivo-Marin, J.-C., Dujon, B., and Fabr,e E. (2006) Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region, Journal of Cell Biology, 172, 2, pp. 189-199

Meas-Yedid, V., Servais, A., Noël, L.H., Brousse, N., Patey, N., Landais, P., Kreis, H., Olivo-Marin, J.-C., and Morelon, E. (2006) L’apport des techniques de quantification de la fibrose pour l’examen anatomopatholoqgiue en transplantation rénale, Le Courrier de la Transplantation, 6, pp. 86-92

2005

Zimmer, C. and Olivo-Marin, J.-C (2005) Coupled parametric active contours, IEEE Trans. Pattern Analysis and Machine Intelligence, 27, 11, pp. 1838-1842

Dufour, A., Shinin, V., Tajbakhsh, S., Guillén, N., Olivo-Marin, J.-C. and Zimmer, C. (2005) Segmenting and tracking fluorescent cells in 4D microscopy with coupled active surfaces, IEEE Trans. Image Processing, 14, 9, pp. 1396-1410 (.pdf)

Peltekian, C., Gordien, E., Garreau, F., Meas-Yedid, V., Soussan, P., Willams, V., Chaix, M.-L., Olivo-Marin, J.-C., Bréchot, C., and Kremsdorf, K. (2005) Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice, Journal of Hepatology, 43, 6, pp. 965-972

Lemasson, M., Saghatelyan, A., Olivo-Marin, J.-C., and Lledo, P.-M. (2005) Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb, Journal of Neuroscience, 25, pp. 6816-6825

Coudrier, E., Amblard, F., Zimmer, C., Olivo-Marin, J.-C., and Guillen, N. (2005) Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica, Cellular Microbiology, 7, 1, pp. 19-27

Bougnères, L., Girardin, S.E., Weed, S.A., Karginov, A.V., Olivo-Marin, J.-C., Parsons, J.T., Sansonetti, P.J., Tran Van Nhieu, G. (2004) Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells, Journal of Cell Biology, 166, pp. 225-235

2004

Frishneck, F., Baldacci, P., Martin, B., Zimmer, C., Thiberge, S., Olivo-Marin, J.-C., Shorte, S.L., and Ménard, R. (2004) Imaging movement of malaria parasites during transmission by Anopheles mosquitoes, Cellular Microbiology, 6, 7, pp.687-694

2003

Fernandez, M.I., Pedron, T., Tournebize, R., Olivo-Marin, J.-C., Sansonetti, P., and Phalipon, A. (2003) Anti-inflammatory role for intracellular dimeric immunoglobulin A by neutralization of lipopolysaccharide in epithelial cells, Immunity, 18, 6, pp. 739-749

Fourgeaud, L, Bessis, A.S., Rossignol, F, Pin, JP, Olivo-Marin, J.-C., Hemar, A.(2003) The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin independent pathway, Journal of Biological Chemistry, 278, 14, pp. 12222-12230

Labruyere, E, Zimmer, C, Galy, V, Olivo-Marin, J.-C., Guillen, N. (2003) EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis, Journal of Cell Science, 116, 1, pp.61-71

2002

Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours : a tool for cell-based drug testing, IEEE Trans. on Medical Imaging, 21, 10, pp. 1212-1221

Olivo-Marin, J.-C. (2002) Extraction of spots in biological images using multiscale products, Pattern Recognition, 35, 9, pp. 1989-1996

Das, V, Nal, B, Roumier, A, Meas-Yedid, V, Zimmer, C, Olivo-Marin, J.-C., Roux, P, Ferrier, P, Dautry-Varsat, A, Alcover, A (2002) Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation, Immunological Reviews, 189, 11, pp. 123-35.

Figueiredo, L., Freitas-Junior, L., Olivo-Marin, J.-C.,.and Scherf, A. (2002) A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation, EMBO Journal, 21, 4, pp. 815-824

Feuerbach, F., Galy, V., Treelles-Stricken, E., Fromont-Racine, M.,Jacquier, A., Gilson, E., Olivo-Marin, J.-C., Scherthan, H., and Nerhbass,U. (2002) Yeast telomers control transcriptional states by spatial positioning, Nature Cell Biology, 4, pp 214-221

2001

Roumier, A., Olivo-Marin, J.-C., Arpin, M., Michel, F., Martin, M., Mangeat, P., Acuto, O., Dautry-Varsat, A. and Alcover, A. (2001) The membrane-microfilament linker ezrin is involved in the formation of the immunological synapse and in T cell activation, Immunity, 15, pp. 715-728

Murphy, C., Saffrich, R, Olivo-Marin, J.-C., Giner, A., Ansorge, W., Fotsis, T. and Zerial, M. (2001) Dual function of RhoD in vesicular movement and cell motility, European Journal of Cell Biology, 80, 6, pp. 391-398

2000

Galy, V., Olivo-Marin, J.-C., Scherthan, H., Doyle, V., Rascalou, N.and Nerhbass, U. (2000) Nuclear pore complexes in the organization of silent telomeric chromatin, Nature, 403, pp. 108-112

1999

Voigt, H., Olivo, J.-C., Sansonetti, P., and Guillen, N. (1999) Myosin IB from Entamoeba histolytica is involved in phagocytosis of human erythrocytes, Journal of Cell Science , 112, 8, pp. 1191-1201

2010

Marim, M., Angelini, E., and Olivo-Marin, J.-C. (2009) Compressed Sensing for Digital Holographic Microscopy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2010, Rotterdam, April 2010

Blanc-Féraud, L., Pankajakshan, P., Carlavan, M., Kam, Z., Zerubia, J., and Olivo-Marin, J.-C. (2010) Methods for confocal microscopic 3D image restoration, SIAM Conference on Imaging Science IS10, Chicago, Illinois, April 12-14, 2010

2009

Marcio M. Marim, Elsa D. Angelini, and J.-C. Olivo-Marin, (2009) Compressed Sensing in microscopy with random projections in the Fourier domain, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009.

Marcio M. Marim, Elsa D. Angelini, and J.-C. Olivo-Marin, (2009) Compressed Sensing in Biological Microscopy, Proceedings of SPIE International Symposium, Wavelets XIII, conf 7446, San Diego, August 2009. (.pdf) (.bib)

Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Particle tracking in fluorescent microscopy images improved by morphological source separation, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009.

de Chaumont, F., Dufour, A., and Olivo-Marin, J.-C. (2009) Tracking articulated objects with physics engines, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009.

Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Multiple Hypothesis tracking in cluttered conditions, IEEE Intern. Conf. on Image Processing, ICIP 2009, Cairo, November 2009.

Marcio M. Marim, Elsa D. Angelini, and J.-C. Olivo-Marin, “A Compressed Sensing approach for biological microscopic image processing” IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI , pp. 1374–1377, 2009. (.pdf) (.bib)

Chenouard, N., Bloch, I., and Olivo-Marin, J.-C. (2009) Multiple Hypothesis Tracking in microscopy images, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2009, Boston, June 2009, pp.

de Chaumont, F., Dufour, A., Serreau, P., Chabout, J., Munter, S., Frischknecht, F., Granon, S. and Olivo-Marin, J.-C. (2009) Using physics engines to track objects in images, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2009, Boston, June 2009, pp. (.pdf)

Marcio M. Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin, "A Compressed Sensing Approach for Biological Microscopy Image Denoising". SPARS'09 - Signal Processing with Adaptive Sparse Structured Representations, 2009. (.pdf) (.bib)

2008

A. Dufour, V. Meas-Yedid, A. Grassart, J.-C. Olivo-Marin, Automated quantification of cellular endocytosis using active contours and wavelets, Proceedings of the IAPR International Conference on Pattern Recognition, 8-11 Dec. 2008, Tampa (FL), USA. (.pdf)

A. Dufour, J.-C. Olivo-Marin, Tracking live cells in 4D microscopy: from Active Surfaces to Active Meshes, Proceedings of the IEEE Asilomar Conference on Signals, Systems & Computers, 26-29 Oct. 2008, Pacific Grove (CA), USA.(.pdf)

M. Marim, B. Zhang, J.-C. Olivo-Marin, and C. Zimmer. Improving single particle localization with an empirically calibrated gaussian kernel. IEEE International Symposium on Biomedical Imaging, ISBI, 2008. (.pdf) (.bib)

B. Zhang, N. Chenouard, J.-C. Olivo-Marin, and V. Meas-Yedid, Statistical colocalization in biological imaging with false discovery control, IEEE International Symposium on Biomedical Imaging, 2008, accepted.(.pdf) (.bib)

Fabrice de Chaumont, Nicolas Chenouard, Aurelie Mouret, Pierre Marie Lledo, Jean-Christophe Olivo-Marin: A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification, 1007-1010, ISBI 2008.(.pdf) (.bib)

Chenouard, N. and Bloch, I. and Olivo-Marin, J.-C. "Feature-aided particle tracking". 15th IEEE International Conference on Image Processing, 2008. ICIP 2008. (.pdf) (.bib)

N. Chenouard and F. de Chaumont and I. Bloch and J.C. Olivo-Marin. "Improving 3D tracking in microscopy by joint estimation of kinetic and image models". Proceedings of the international conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI, MIAAB workshop 2008. (.pdf) (.bib)

Chenouard, N. and Vernhettes, S. and Bloch, I. and Olivo-Marin, J.-C. "Morphological source separation for particle tracking in complex biological environments". 19th International Conference on Pattern Recognition, 2008. ICPR 2008. (.pdf) (.bib)

Tauber, C. and Rodriguez, P.F.G. and Loriette, V. and Chenouard, N. and Dubertret, B. and Olivo-Marin, J.-C. "Fast and automatic reconstruction of structured illumination microscopy images with multiscale products". 19th International Conference on Pattern Recognition, 2008. ICPR 2008. (.pdf) (.bib)

2007

Zhang, B., Fahdili, J., Starck, J.-L. and Olivo-Marin, J.-C. (2007) Multiscale variance-stabilizing transform for mixed-Poisson-Gaussian processes and its applications in bioimaging, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007(.pdf)

Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Feature-Adapted Fast Slant Stack, IEEE Intern. Conf. on Image Processing 2007, San Antonio, Sept. 2007

Pankajakshan, P., Zhang, B., Blanc-Féraud, L., Kam, Z., Olivo-Marin, J.-C., and Zerubia, J. (2007) Parametric Blind Deconvolution for Confocal Laser Scanning Microscopy, IEEE Intern. Conf. on Engineering in Biology and Medicine 2007, Lyon, August. 2007, pp. 6531-6534

Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of curvilinear objects in biological noisy images using Feature-Adapted Fast Slant Stack, SPIE, International Conference on Wavelets XII 2007, San Diego, August 2007

Berlemont, S., Bensimon, A. and Olivo-Marin, J.-C. (2007) Detection of Curvilinear objects in Noisy Image using Feature-Adapted Beamlet Transform, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2007, Honolulu, April 2007

2006

Pécréaux, J., Zimmer, C. and Olivo-Marin, J.-C. (2006) Biophysicall active contours for cell tracking I : Tension and bending, IEEE Intern. Conf. on Image Processing 2006, Atlanta, Oct. 2006

Olivo-Marin, J.-C. (2006) An overview of image analysis in multidimensional biological microscopy, IEEE Intern. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2006, Toulouse, May 2006

Glory, E., Meas-Yedid, V., Pinset, C., Stamon, G., and Olivo-Marin, J.-C. (2006) Automated image-based screening of cell cultures for cell therapy, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 259-262

Zhang, B., Enninga, J., Olivo-Marin, J.-C., and Zimmer, C .(2006) Automated super-resolution detection of fluorescent rods in 2D, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2006, Arlington, April 2006, pp. 1296–1299(.pdf)

Zhang, B., Zerubia, J., and Olivo-Marin, J.-C. (2006) A study of Gaussian approximations of microscopic PSF, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2006, 6090

2005

Glory, E., Meas-Yedid, V., Pinset, C., Olivo-Marin, J.-C. and Stamon, G. (2005) A quantitative criterion to evaluate color segmentations application to cytological images, Advanced Concepts for Intelligent Vision Systems, ACIVS 2005, Antwerp, Belgium, September 20-23, 2005, pp. 227-232

2004

Zimmer, C., Zhang, B., Blazquez, S. Labruyère, E. Frischknecht, F., Ménard, R., Guillén, N. and Olivo-Marin, J.-C. (2004) Automated cell tracking tools for quantitative motility studies, ISIS International Symposium On Interdisciplinary Science, Natchitoches, Louisiana (USA), 6-8 October 2004, AIP Conference Proceedings Vol. 755, pp. 177-184

Genovesio, A., Belhassine, Z. and Olivo-Marin, J.-C. (2004) Adaptive gating in gaussian bayesian multi-target tracking, IEEE Intern. Conf. on Image Processing 2004, Singapore, Oct. 2004

Meas-Yedid, V., Glory, E., Morelon, E., Pinset, C., Stamon, G. and Olivo-Marin, J.-C. (2004) Automatic color space selection for biological image segmentation, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004

Genovesio, A., and Olivo-Marin, J.-C. (2004) Split and merge data association filter for dense multi-target tracking, IAPR Intern. Conf. on Pattern Recogn. ICPR 2004 , Cambridge, Aug. 2004

Zhang, B., Zimmer, C., and Olivo-Marin, J.-C. (2004) Tracking fluorescent cells with coupled geometric active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004 , Arlington, April 2004, pp.476-479

Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Interacting multiple model based method to track moving fluorescent biological spots, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1239-1242

Dey, N., Blanc-Fraud, L., Zimmer, C., Kam, Z., Olivo-Marin, J.-C. and Zerubia, J. (2004) A deconvolution method for confocal microscopy with total variation regularization, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2004, Arlington, April 2004, pp. 1223-1226

Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2004) Suivi de multiples taches fluorescentes par interaction de differents modèles de mouvement en vidéomicroscopie, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2004, Toulouse, janvier 2004

2003

Genovesio, A., Zhang, B. and Olivo-Marin, J.-C. (2003) Tracking of multiple fluorescent biological objects in three dimensional video microscopy, IEEE Intern. Conf. on Image Processing 2003, Barcelona, Sept. 2003, I, pp. 1105-1108

Genovesio, A., and Olivo-Marin, J.-C. (2003) Tracking fluorescent spots in biological video microscopy, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 100-111

Féral, M., Zimmer, C., and Olivo-Marin, J.-C. (2003) Cell tracking: explicit versus implicit active contour methods, SPIE, 3D and Multidimensional Microscopy, San Jose, January 2003, 4964, pp. 69-77

2002

Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Improving active contours for segmentation and tracking of motile cells in videomicroscopy, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, II, pp. 286-289

Meas-Yedid, V., Tilie, S. and Olivo-Marin, J.-C. (2002) Color image segmentation based on Markov Random Field Clustering for histological image analysis, IAPR Intern. Conf. on Pattern Recogn. ICPR 2002, Québec, Aug. 2002, I, pp. 796-799

Zimmer, C., Labruyère, E., Meas-Yedid, V., Guillén, N. and Olivo-Marin, J.-C. (2002) Quantitative analysis of cellular shape and motility parameters with improved active contours, IEEE Intern. Symp. on Biomedical Imaging, ISBI 2002 , Whashington DC, July. 2002, pp. 859-862

Zimmer, C., Meas-Yedid, V., Glory, E., Labruyère, E., Guillén, N. and Olivo-Marin, J.-C. (2002) Analyse de la forme et du mouvement cellulaires par les contours actifs, Congrès Reconnaissance des Formes et Intelligence Artificielle, RFIA 2002, Angers, janvier 2002, II, pp. 435-442

2001

Cuartero, G., Meas-Yedid, V., Galy, V., Nehrbass, U. and Olivo-Marin, J.-C. (2001) Three dimensional spot detection by multiscale analysis, IEEE Intern. Conf. on Image Processing 2001, Oct. 2001, I, pp. 317-320

Zimmer, C., Meas-Yedid, V., Labruyère, E., Guillen, N., and Olivo-Marin, J.-C. (2001)Active contours applied to the shape and motion analysis of amoeba, SPIE, Mathematical Modelling, Vision Geometry X, San Diego, August 2001, pp. 124-134

Meas-Yedid, V., Cloppet, F., Roumier, A., Alcover, A., Olivo-Marin, J.-C. and Stamon, G. (2001) Quantitative microscopic image analysis by active contours, Visual Interface, VI’2001, Ottawa, June 2001, pp. 277-284

Meas-Yedid, V., Zimmer, C. and Olivo-Marin, J.-C. (2001) Active contours for the motility analysis in biological microscopy images, Intern. Conf. on Image and Signal Processing, ICISP’2001, Morrocco, May 2001, pp. 230-239

2000

Meas-Yedid, V. and Olivo-Marin, J.-C. (2000) Active contours for the movement and motility analysis of biological objects, IEEE Intern. Conf. on Image Processing 2000, I, pp. 172-175

Meas-Yedid, V., Dufour, A., Zhang, B., Grassart, A., Sauvonnet, N. and Olivo-Marin, J.-C. (2009) Automated quantification of cellular processes with applications to high-content screening, in Handbook of Pattern Recognition and Computer Vision, C H Chen ed., World Scientific.

Meijering, E., Smal, I., Dzyubachyk, O. and Olivo-Marin, J.-C. (2008) Time-lapse imaging, in Microscope Image Processing, Q. Wu, F. A. Merchant and K. R. Castleman eds., Academic Press

Genovesio, A. and Olivo-Marin, J.-C. (2008) Particle Tracking in 3D+t Biological Imaging, in Microscope Image Analysis for Life Science Applications, J. Rittscher, S.T.C. Wong, and R. Machiraju eds., Artech House